Creating a good learning and sharing environment for bioinformatics

Sammanfattning

Most bioinformatics researchers create their own working environments depending on their training, access to computing resources and what advice they receive from other researchers. This makes the development of training programs difficult as much knowledge and work is locked into each researcher’s unique computing environment for data analysis.

Using software container solutions such as Biocontainers and a ‘one image per task’ coding pattern when developing a workflow, it is easy for an application expert to rewrite workflows for research, training and dissemination of new workflows for analysing data. This paper describes the reasoning behind this approach which is now being tested in a collaboration between livestock researchers in Sweden and South Africa.

Publicerad i

Titel: Proceedings of the 12th World Congress on Genetics Applied to Livestock Production (WCGALP) : echnical and species orientated innovations in animal breeding,and contribution of genetics to solving societal challenges
Utgivare: Wageningen Academic Publishers

Konferens

12th World Congress on Genetics Applied to Livestock Production (WCGALP), 2022-07-03, Wageningen

SLU författare

• Klingström, Tomas

  • Institutionen för husdjurens biovetenskaper, Sveriges lantbruksuniversitet
    

• Ohlsson, Jan Ingemar

  • Institutionen för husdjurens biovetenskaper, Sveriges lantbruksuniversitet
    

Globala målen (SDG)

SDG4 God utbildning för alla
SDG9 Hållbar industri, innovationer och infrastruktur

UKÄ forskningsämne

Bioinformatik och systembiologi
Lärande
Bioinformatik (beräkningsbiologi)

Publikationens identifierare

• DOI: https://doi.org/10.3920/978-90-8686-940-4_13
• eISBN: 978-90-8686-940-4

Permanent länk till denna sida (URI)

https://res.slu.se/id/publ/132635